Package index • pharos

Univariate & Distribution Plots

Plots for distributions, grouped data, functions, and time series.

plotArea(): Stacked Area Plot
plotBar(): Themed Barplot with Grid, Labels and Optional Connecting Lines
plotBox(): Grouped Boxplot
plotCatDist(): Categorical Distribution Plot
plotDens(): Grouped Density Plot
plotDensBox(): Density and Boxplot Combination (Grouped)
plotDot(): Dot Plot for Estimates and Confidence Intervals
plotECDF(): Empirical Cumulative Distribution Function
plotFdist(): Frequency Distribution Plot
plotLines(): Line Plot for Multiple Series
plotQQ(): QQ-Plot for Any Distribution
plotRidge(<default>) plotRidge(<formula>): Ridge Plot (Stacked Density Plot)
plotViolin(): Violin Plot
plotFun(): Plot Mathematical Functions
plotProbDist(): Plot Probability Distribution
shade(): Produce a shaded Curve

Bivariate & Specialized Plots

Plots for relationships, contingency tables, diagnostics, and specialized displays.

plotAssoc(): Association Plot for Contingency Tables
plotBag(): Create a Bagplot (Bivariate Boxplot)
plotBubble(<default>) plotBubble(<formula>): Bubble Plot
plotCor(): Correlation Matrix Plot with Theming and Optional Labels
plotDens2D(): Two-Dimensional Kernel Density Plot
plotHeatmap(): Heatmap for Categorical Data
plotHexbin(): Hexagonal Binning Plot
plotMosaic(): Mosaic Plot for 2-Way Contingency Tables
plotXY(): Scatterplot with Optional Smooth Lines
plotBinaryTree(): Binary Tree
plotCirc(): Circular Chord Diagram
plotFacet(): Facet Panel Matrix in Base Graphics
plotLift(): Lift Chart
plotMiss(): Plot Missing Data
plotPolar(): Polar Plot for Radial Data
plotPropCI(): Plot Proportions with Confidence Intervals
plotTernary(): Ternary Plot
plotTimeSeries(): Combined Plot of a Time Series and Its ACF and PACF
plotTreemap(): Treemap Plot
plotWeb(): Plot a Web of Connected Points
plot(<BlandAltman>): Bland-Altman Plot
plot(<Desc.qn>): Plot Method for Numeric-Categorical Desc Objects
plot(<Desc.table>): Plot Method for Categorical-Categorical Desc Objects
plot(<Lc>) lines(<Lc>) points(<Lc>) lines(<LcList>) points(<LcList>) plot(<LcList>): Plot Methods for Lorenz Curve Objects

Annotation, Axes & Layout

Plot annotation, axes, smoothers, themes, and graphics-state helpers.

abcCoords(): Coordinates for Named Plot Positions
axisBreak(): Place a Break Mark on an Axis
axisFmt(): Draw an Axis With Formatted or Rotated Labels
axTicks.POSIXct() axTicks.Date(): Compute Axis Tickmark Locations (For POSIXct Axis)
barText(): Place Value Labels on a Barplot
boxedText(): Add Text in a Box to a Plot
colLegend(): Add a Color Legend to a Plot
errBars(): Add Error Bars to an Existing Plot
polarGrid(): Draw a Polar Grid with Optional Labels
stamp(): Date/Time/Directory Stamp the Current Plot
textLegend(): Direct Labels in the Right Margin
titleRect(): Plot Boxed Annotation
lines(<lm>) lines(<lmlog>): Add a Linear Regression Line
lines(<loess>): Add a Loess Smoother and Its Confidence Band
splineX() lines(<SplineX>): Add a Spline Smoother
.useTheme .drawGrid() .drawBox() .withGraphicsState() .applyParFromDots() .marTop() .resolveTitle() .marginLines(): Graphics Framework Helpers
isValidPlotRegion(): Check Whether the Current Plot Region Is Large Enough
mar(): Get or set plot margins conveniently
preview(): Preview an Object
setBackCol(): Background of a Plot
spreadOut(): Spread Out a Vector of Numbers To a Minimum Interval
getTheme() setTheme() resetTheme(): pharos's Graphics and Formatting Theme

Geometry & Coordinates

Geometric structures, coordinate conversions, and transformations.

arc(): Arc Geometry
band(): Band Geometry
bezier(): Bézier Geometry
canvas(): Canvas for Geometric Plotting
circle(): Circle Geometry
ellipse(): Ellipse Geometry
polygon(): Draw Polygonal Geometries
regPolygon(): Regular Polygon Geometry
ring(): Ring Geometry
polToCart() cartToPol() cartToSph() sphToCart(): Coordinate Transformations Cartesian/Polar/Spherical
degToRad() radToDeg(): Convert Degrees to Radians and Vice Versa
lineToUser(): Convert Line Coordinates To User Coordinates
rotate(): Rotate a Geometric Structure
transformXY(): Apply Geometric Transformations to Coordinates

Colours & Palettes

Colour conversion, manipulation, lookup, and palette construction.

color-conversion-overview: Color Conversion Functions in pharos
cmykToCmy(): Convert CMYK to CMY
cmykToRgb(): Convert CMYK to RGB
cmyToCmyk(): Convert CMY to CMYK
colToHex(): Convert R Colors to Hexadecimal Colors
colToHSV(): Convert R Colors to HSV
colToRGB(): Convert R Colors to RGB
grayScale(): Convert Colors to grayScale
hexToCol(): Convert Hex Colors to Named R Colors
hexToRGB(): Convert Hex Colors to RGB
longToRGB(): Convert Long Integers to RGB
rgbToCmy(): Convert RGB to CMY
rgbToCol(): Convert RGB Colors to the Nearest Named R Color
rgbToHex(): Convert RGB to Hexadecimal Colors
rgbToLong(): Convert RGB to Long Integers
addOpacity(): Add an Alpha Channel to Colors
colToOpaque(): Equivalent Opaque Color for Transparent Color
contrastColor(): Choose Optimal Text Color Based on WCAG Contrast
darken(): Darken Colors
fade(): Fade Colors
findColor(): Get Color on a Defined Color Range
lighten(): Lighten Colors
mixColors(): Mix Colors
hcol(): Helsana Colors
pal() plot(<Palette>): Get a Color Palette
palNames(): List Available Palette Names

Formatting, Units & Tables

Formatting of values and confidence intervals, units, and table helpers.

fm(): Format Numbers and Dates
fmCI(): Format Confidence Intervals
styles() style() print(<Style>): Format Styles
as.CI() is.CI(): Confidence Interval Objects
convUnit(): Symbolic Unit Conversion Engine
print(<Unit>): Print Object with Unit
unit() `unit<-`(): Get or Set Unit Attribute
Formulas: Formula Interface – Common Arguments
ftable(<list>): Flat Contingency Table for tapply-Like Lists
Prefix: DescToolsX Constants

Strings

String inspection, extraction, transformation, and formatting.

string-overview: String Functions in pharos
strCountW(): Count Words in Strings
strDist(): Compute Distances Between Strings
strIsNumeric(): Check if Character Strings Represent Numeric Values
strLen(): String length
strPos(): Find Position of First Occurrence Of a String
strChop(): Split a String into a Number of Sections of Defined Length
strExtract(): Extract First Match from Strings
strExtractBetween(): Extract Substrings Between Patterns
strLeft() strRight(): Returns the Left Or the Right Part Of a String
strSplit(): Split Strings
strVal(): Extract Numeric Values from Strings
lineSep(): Create a Line Separator String
strAbbr(): Abbreviate Strings Uniquely
strAlign(): Align Strings
strCap(): Capitalize Strings
strPad(): Pad a String With Justification
strRev(): Reverse Strings
strSpell(): Spell Strings Using Phonetic Alphabets
strTrim(): Remove Leading/Trailing Whitespace From A String
strTrunc(): Truncate Strings and Add Ellipses If a String is Truncated.

HTML & Embedding

HTML markup, embedded files and images, and self-contained HTML tables.

as.html(): Mark a character vector as HTML
preview(<html>): Print HTML markup as readable text
as.fileLink(): Link to a self-contained embedded file
as.img(): Embed a plot as an inline HTML image
embedFile(): Base64-encode a file
escapeHtml(): Escape HTML special characters
htmlHat() htmlBar(): HTML notation for hat and bar diacritics
`%_%`: Subscript notation
toHtmlTable(): Render a matrix as an HTML table